Jingyuan
Sun.

Understanding intelligence across human brains, bodies, and machines.

Portrait of Dr Jingyuan SunJINGYUAN SUN / MANCHESTER, UK
01 / ABOUT

I am an Assistant Professor (Lecturer) in Computer Science at The University of Manchester. I am a member of ELLIS and a Principal Investigator within the ELLIS network. I also serve as a founding editorial board member of the Journal of Terminology and Knowledge Engineering (JTKE), founded the AI4BCI Conference, and coordinate the HIT Webinar series. I am also a Fellow of Advance HE (FHEA).

Before joining Manchester, I was a postdoctoral researcher in the Department of Computer Science at KU Leuven, where I worked with Prof. Marie-Francine Moens from 2022 to 2024. My research there was supported by the ERC Advanced Grant project CALCULUS under Horizon 2020. Prior to that, I worked as a Senior R&D Engineer at Baidu in China.

I received my PhD and master's degree from the Institute of Automation, Chinese Academy of Sciences, under the supervision of Prof. Chengqing Zong. My doctoral work brought together computational linguistics and neurolinguistics, and established my long-standing interest in the relationship between biological and artificial intelligence.

Fully funded PhD opportunities are available. Get in touch ↗

02 / RESEARCH

My research is centred on the broader question of how human intelligence can be understood computationally, and how this understanding can contribute to the development of more capable artificial intelligence. My work currently develops along three main directions.

01

Decoding and Modeling Human Mind

We investigate the computational principles underlying human intelligence by connecting neural activity with representations in AI. We develop models that decode human perception from brain signals and use AI as an experimental framework for understanding cognition, dysfunction, and recovery.

02

Human-like Machine Intelligence

We build machine intelligence capable of memory, adaptation, planning, and robust reasoning. By studying intelligence under limited resources and uncertainty, we aim to develop AI systems that are efficient, resilient, and trustworthy.

03

Mechanistic Modeling of Biological Systems

We seek to uncover the organizing principles of living systems across molecular, cellular, and organismal scales. By combining foundation models with mechanistic and causal computation, we aim to move AI beyond pattern recognition toward scientific explanation, prediction, and intervention.

03 / PUBLICATIONS

2026

10 outputs
  1. Briefings in Bioinformatics
    Foundation models in omics research: a comprehensive survey

    Haozhe Liu, Wenhao Cai, Yizheng Sun, Haiping Liu, Zhiyong Zou, Qian Zhao, Sokratia Georgaka, Hongpeng Zhou, Jingyuan Sun

  2. CognitionAccepted
    Grammatical acceptability is determined by the fit between sentence type and the speaker’s intended meaning in context: Evidence from six pre-registered grammatical acceptability judgment studies

    Ben Ambridge, Aliza Bukhari, I. Made Sena Darmasetiyawan, Chanel Hanes, Wenting Xu, Jingyuan Sun, Yang Cui

  3. EMNLP 2026Forthcoming
    Seeing What Is Actually There: PriVE-Bench and PriVE-Tools for Counterfactual Evaluation of Agentic Visual Evidence in VLMs

    J Sun, J Tu, Y Xue, Y Jiang, G Xu, Z Yao, R Qian, Y Sun, H Zhou, J Sun, ...

  4. Findings of ACL 2026
    Decoding the multimodal mind: Generalizable brain-to-text translation via multimodal alignment and adaptive routing

    Chunyu Ye, Yunhao Zhang, Jingyuan Sun, Chong Li, Yang Zhao, Shaonan Wang

  5. AACL-IJCNLP 2026Forthcoming
    Are Reasoning Vision-Language Models Robust to Semantic Visual Distractions?

    Y Sun, M Zhan, Y Ma, JT See, Y Wang, Z Wang, H Li, Y Cui, W Cai, J Sun, ...

  6. arXiv preprintPreprint
    CellWorld: From Gene-Level Reconstruction to Latent Cell Prediction in Spatial Transcriptomics Foundation Models

    H Liu, Q Zhao, L Lin, J Sun, H Zhou

  7. arXiv preprintPreprint
    Component-level lesioning of language models reveals clinically aligned aphasia phenotypes

    Y Wang, J Zheng, J Sun, Y Zhang, C Ye, J Li, C Zong, S Wang

  8. arXiv preprintPreprint
    Computational Lesions in Multilingual Language Models Separate Shared and Language-specific Brain Alignment

    Y Cui, J Sun, Y Sun, Y Wang, Y Zhang, J Li, S Wang, H Zhou, J Hale, ...

  9. SSRN preprintPreprint
    End-to-End Privacy in Brain-Computer Interfaces: A Survey of Vulnerabilities, Privacy-Enhancing Technologies, and Governance

    George Ford, Jingyuan Sun, Mustafa A. Mustafa, Zhenhong Li

  10. arXiv preprintPreprint
    Pmmc: Prospective multimodal memory compilation for long-term lvlm agents

    J Sun, Y Lin, Y Xue, Y Wang, Z Yao, R Qian, Z Xu, J Li, X Liu, J Pan, J Sun, ...

2025

07 outputs
  1. NeurIPS 2025
    MIRA: Medical Time Series Foundation Model for Real-World Health Data

    Hao Li, Bowen Deng, Chang Xu, Zhiyuan Feng, Viktor Schlegel, Yu-Hao Huang, Yizheng Sun, Jingyuan Sun, Kailai Yang, Yiyao Yu, Jiang Bian

  2. AAAI 2025
    NeuralFlix: A Simple While Effective Framework for Semantic Decoding of Videos from Non-invasive Brain Recordings

    Jingyuan Sun, Mingxiao Li, Marie-Francine Moens

  3. EMNLP 2025
    Does Acceleration Cause Hidden Instability in Vision Language Models? Uncovering Instance-Level Divergence Through a Large-Scale Empirical Study

    Yizheng Sun, Hao Li, Chang Xu, Hongpeng Zhou, Chenghua Lin, Riza Batista-Navarro, Jingyuan Sun

  4. Findings of NAACL 2025
    LVPruning: An Effective yet Simple Language-Guided Vision Token Pruning Approach for Multi-modal Large Language Models

    Yizheng Sun, Yanze Xin, Hao Li, Jingyuan Sun, Chenghua Lin, Riza Batista-Navarro

  5. arXiv preprintPreprint
    Bridging brains and models: Moe-based functional lesions for simulating and rehabilitating aphasia

    Y Wang, J Sun, J Zheng, Y Zhang, C Ye, J Li, C Zong, S Wang

  6. bioRxiv preprintPreprint
    Representation, alignment, and generation: a comprehensive survey of foundation models for non-invasive brain decoding

    Y Wang, S Wang, W Cai, G Ford, Y Cui, Y Zhang, C Du, C Fan, D Li, ...

  7. arXiv preprintPreprint
    Silent Hazards of Token Reduction in Vision-Language Models: The Hidden Impact on Consistency

    Y Sun, H Li, C Xu, C Lin, R Batista-Navarro, J Sun

2024

09 outputs
  1. Information Fusion 112
    From Sight to Insight: A Multi-task Approach with the Visual Language Decoding Model

    Wei Huang, Pengfei Yang, Ying Tang, Fan Qin, Hengjiang Li, Diwei Wu, Wei Ren, Sizhuo Wang, Yuhao Zhao, Jing Wang, Haoxiang Liu, Jingpeng Li, Yucheng Zhu, Bo Zhou, Jingyuan Sun, Qiang Li, Kaiwen Cheng, Hongmei Yan, Huafu Chen

  2. LREC-COLING 2024
    DMON: A Simple yet Effective Approach for Argument Structure Learning

    Wei Sun, Mingxiao Li, Jingyuan Sun, Jesse Davis, Marie-Francine Moens

  3. NAACL 2024
    MapGuide: A Simple yet Effective Method to Reconstruct Continuous Language from Brain Activities

    Xinpei Zhao, Jingyuan Sun, Shaonan Wang, Jing Ye, Xiaohan Zhang, Chengqing Zong

  4. IJCAI 2024 accepted tutorialTutorial
    Brain Encoding and Decoding with Deep Neural Networks: Methods, Applications, and Future Directions

    Jingyuan Sun, Weihao Xia, Jixing Li, Shaonan Wang, Jiajun Zhang, A. Cengiz Oztireli, Marie-Francine Moens

  5. ACL 2024 tutorial abstractTutorial
    Computational Linguistics for Brain Encoding and Decoding: Principles, Practices and Beyond.

    Jingyuan Sun, Shaonan Wang, Zijiao Chen, Jixing Li, Marie-Francine Moens

  6. EAMT 2024 project paper
    ERC Advanced Grant Project CALCULUS: Extending the Boundary of Machine Translation

    Jingyuan Sun, Mingxiao Li, Ruben Cartuyvels, Marie-Francine Moens

  7. arXiv preprintPreprint
    Computational models to study language processing in the human brain: A survey

    S Wang, J Sun, Y Zhang, N Lin, MF Moens, C Zong

  8. arXiv preprintPreprint
    End-to-end Planner Training for Language Modeling

    N Cornille, F Mai, J Sun, MF Moens

  9. arXiv preprintPreprint
    NeuroCine: Decoding Vivid Video Sequences from Human Brain Activities

    Jingyuan Sun, Mingxiao Li, Zijiao Chen, Marie-Francine Moens

2023

06 outputs
  1. NeurIPS 2023
    Contrast, Attend and Diffuse to Decode High-Resolution Images from Brain Activities

    Jingyuan Sun, Mingxiao Li, Zijiao Chen, Yunhao Zhang, Shaonan Wang, Marie-Francine Moens

  2. IJCAI 2023
    Fine-tuned vs. Prompt-tuned Supervised Representations: Which Better Account for Brain Language Representations?

    Jingyuan Sun, Marie-Francine Moens

  3. ECAI 2023
    Decoding Realistic Images from Brain Activity with Contrastive Self-supervision and Latent Diffusion

    Jingyuan Sun, Mingxiao Li, Marie-Francine Moens

  4. ECAI 2023
    Investigating Neural Fit Approaches for Sentence Embedding Model Paradigms

    Helena Balabin, Antonietta Gabriella Liuzzi, Jingyuan Sun, Patrick Dupont, Rik Vandenberghe, Marie-Francine Moens

  5. ECAI 2023
    Tuning In to Neural Encoding: Linking Human Brain and Artificial Supervised Representations of Language

    Jingyuan Sun, Xiaohan Zhang, Marie-Francine Moens

  6. Society for the Neurobiology of Language 2023 abstractConference abstract
    A Comprehensive Analysis of the Neural Fits of Sentence Embedding Model Classes

    H Balabin, AG Liuzzi, J Sun, P Dupont, MF Moens, R Vandenberghe

2022

01 outputs
  1. Scientific Data 9 (1)
    An fmri dataset for concept representation with semantic feature annotations

    Shaonan Wang, Yunhao Zhang, Xiaohan Zhang, Jingyuan Sun, Nan Lin, Jiajun Zhang, Chengqing Zong

2021

01 outputs
  1. IEEE Transactions on Neural Networks and Learning Systems 32 (2)
    Neural encoding and decoding with distributed sentence representations

    Jingyuan Sun, Shaonan Wang, Jiajun Zhang, Chengqing Zong

    Online 2020; journal issue 2021

2020

01 outputs
  1. COLING 2020
    Distill and replay for continual language learning

    Jingyuan Sun, Shaonan Wang, Jiajun Zhang, Chengqing Zong

2019

01 outputs
  1. AAAI 2019
    Towards sentence-level brain decoding with distributed representations

    Jingyuan Sun, Shaonan Wang, Jiajun Zhang, Chengqing Zong

2018

01 outputs
  1. EMNLP 2018
    Memory, show the way: Memory based few shot word representation learning

    Jingyuan Sun, Shaonan Wang, Chengqing Zong

One Scholar entry titled “Association for Computational Linguistics” is a publisher-name metadata record rather than a paper, so it is omitted.

04 / TEAM

My amazing PhD students
and team members.

I am grateful to work alongside this talented group. Their curiosity, dedication and collaborative spirit make our research possible.

Main supervisor

Wenhao Cai

Co-supervisors: Hongpeng Zhou and Goran Nenadic. Develops foundation models for heterogeneous multi-omics data and disease-related tissue organization; enjoys tennis, travel and varied cuisines.

Main supervisor

George Ford

Main supervisor

Yifan Wang

Co-supervisors: Chenghua Lin and Mustafa Mustafa. Studies LLMs, BCI and long-sequence representation learning for robust neural decoding from non-invasive signals.

Co-supervisor

Yizheng Sun

Main supervisor: Riza Batista-Navarro; co-supervisor: Chenghua Lin. Studies efficient multimodal LLMs, token pruning, compression and optimization, and the broader impact of efficient AI.

Co-supervisor

Yang Cui

Main supervisor: Goran Nenadic. Uses LLMs, computational lesions and spiking neural networks to study neural encoding and multilingual language comprehension.

Co-supervisor

Haozhe Liu

Co-supervision

Other Co-supervised Students

Jimin Huang · Yuyan Wang · Yixiang Zheng

Academic assessment

Chaoyuan LiangInternal assessor

Master’s supervision & assessment at KU Leuven

Supervised / co-promoted: Ali Togar Dincer — Decoding Linguistic Stimulus from Human Brain Activities with Language Models; Jonathan Swinnen — Decoding Visual Stimulus from Human Brain Activities with Diffusion Models. Both were listed as ongoing on the previous website.

Thesis assessor: David Debot — Approximating Volume Computations with Neural Networks; Arne Vermolen — Investigating Neural-Symbolic Methods and Tasks: A Comparative Evaluation; Anissa Faik — Bringing a New Perspective to the Classroom: Detecting and Explaining Student Outliers; Lara Roosens — Turning Competency Data into Actionable Insights for Teachers; Toon Sauvillers — Learning Analytics Dashboard: Visualising Students’ Performance Taking into Account Their Socioeconomic Background.

05 / ACTIVITIES

Beyond the
research paper.

INVITED TALKS
  • 2024
    Mind Meets Machine: Unveiling Brain-AI Alignment in Language Understanding and BeyondAIBED workshop, AAAI 2024 keynote
  • 2024
    Insights into Brain-AI Synchronization for Enhanced Language UnderstandingMartin Schrimpf’s lab, EPFL
  • 2024
    Brain-inspired Natural Language Representation ModelsCoML Lab, École Normale Supérieure
  • 2024
    Deciphering the Visual Mind: Generative Models for Brain DecodingESAT, KU Leuven
  • 2024
    Brain Encoding and Decoding for Language and Visual PerceptionCALCULUS Symposium, KU Leuven
  • 2024
    Encoding and Decoding Brain Linguistic and Visual PerceptionAlexander Bertrand’s lab, KU Leuven
  • 2023
    Image Reconstruction from Brain Activities with Contrastive Learning and Latent DiffusionDTAI lab, KU Leuven
  • 2023
    Decoding High-Resolution Images from Brain ActivitiesWei Huang’s team, UESTC
  • 2023
    Brain Decoding and “Mind Reading”Tianqiao and Chrissy Chen Institute public lecture
SERVICE

Chair of the AAAI 2024 workshop Artificial Intelligence for Brain Encoding and Decoding; organizer of the ERC CALCULUS symposium; and organizing chair of AI for BCI 2026 ↗.

Session chair at IJCAI 2023; programme committee member for AAAI, ECAI, IJCAI, EMNLP and COLING; reviewer for IEEE TPAMI.

NEWS ARCHIVE
  • Paper accepted at NeurIPS 2025; tutorial accepted at AAAI 2026.
  • Paper accepted at EMNLP 2025.
  • Awarded Fellow of Advance HE (FHEA); received UMRI Interdisciplinary Research Placement Award as PI.
  • Awarded EuroHPC Benchmark and Development Access as PI.
  • Awarded EPSRC Doctoral Landscape Award studentship and University of Manchester–CSC studentship as PI.
  • Papers accepted at AAAI 2025 and NAACL 2025.
  • ACL and IJCAI 2024 tutorials concluded.
  • Co-authored paper with Wei Huang accepted by Information Fusion.
  • Co-authored paper with Wei Sun accepted by LREC 2024.
  • Tutorial accepted by IJCAI 2024.
  • Tutorial accepted by ACL 2024.
  • Pitch presentation at the DigiSoc General Assembly, KU Leuven.
  • Awarded a DAAD-AINet postdoctoral fellowship.
  • Visual brain decoding paper accepted by NeurIPS 2023; announced the AAAI 2024 AIBED workshop.
  • Three brain encoding and decoding papers accepted by ECAI 2023.
  • Paper accepted by IJCAI 2023.
  • The previous homepage reported acceptance of a “Computational Linguistics for Brain Encoding and Decoding” tutorial for EMNLP 2024.

News dates are drawn from the previous Google Sites homepage. Some entries were combined when they described the same month.

06 / CONTACT

Let’s talk about
what’s next.

jingyuan.sun@manchester.ac.uk
Department of Computer Science
The University of Manchester
Google Scholar ↗LinkedIn ↗